NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308389_1029132

Scaffold Ga0308389_1029132


Overview

Basic Information
Taxon OID3300031518 Open in IMG/M
Scaffold IDGa0308389_1029132 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1793
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308389_10291321F002978AGGTGGVSVRNWRVAIVPWADRRLWFIQARCGRRVVWGVVYDAADPDSVALVRRVVATLRNAGADCSALPSPLPGVPPGA
Ga0308389_10291322F000642GAGGVQEISVALAICAVAAAVWYMRRRDAGAGRVRGWLLLYDDVGGWRTLPAVYGDSGIVADGVTYPASLPALRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWLDFLRVVGVVLPAAFAYFTWAQVSVLQALVSQILALVGGK
Ga0308389_10291323F001381GAGMQYVIATLYVLVWLALAAGAALVLPRWALPAALVQLAVAYVMLRSWLTAAGGDDGA
Ga0308389_10291324F000855GAGGMDWLEDFFSKVVSWFDERAANIYNAVVAFINVPVDVWNGWMDALLHPAQAMPSIPALRWVVDWLGGVADYTRLMYMLVDYVAYASVVQQALAAQLTIVFVGLGFRAWLVLRRIVLVS
Ga0308389_10291325F011940N/ADGLEALGRAVAPPTGRICDLPVPVLADAPEYGFKDALPDFVAGLCAFFGVASPVLGFVRLPVTLMVVGFVFWTAWRVFRSLS
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