NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10000507

Scaffold Ga0307488_10000507


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10000507 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32282
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (55.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008783Metagenome / Metatranscriptome328Y
F047361Metagenome150N
F051469Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_100005071F051469AGGAGMIEKFTVEIEVGDRVEMGRMHLANQTVKAIEIDKWGHPVMVLSSGRKRGLFNMRLKKLIPEDVKRVQEPAEVMMTKEQWVEAQKKIDEANSK
Ga0307488_1000050718F047361AGGAMTIKMKFSRNNTGSITMYDGEEIQHNHEKSFCLISLSEEEPDQIIHTLNKQFPEDHVAVFLWPKGNGDFSNPMLKYACAHARFIVVDKKDTPLFLEEEHLDEKKTYVVTEQETWEDIFVRIKTERFSK
Ga0307488_1000050742F008783AGGAMATVQPRHERNDPNAGMQGAYYTVDIAMSGFLDTETINGGRLSPCAANDFATKPTTKAQSLLVSRAQLRYKIMLNNLQIRSNCKIINMVTTYAADAGDSPITDINFGIVFENDDFVPTTGTASDGSTATTTKVLYIQDKIAEALYASHTEKMSVFNPSSNIGQIADEEVSVGPVLLVSQDDILDGITVAEVAGFRSNVDAETPTDNALTYSAE
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