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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031519 Open in IMG/M |
| Scaffold ID | Ga0307488_10001145 Open in IMG/M |
| Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22253 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000379 | Metagenome / Metatranscriptome | 1211 | Y |
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F002602 | Metagenome / Metatranscriptome | 544 | Y |
| F073442 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307488_1000114516 | F002602 | AGG | MKNTDQIKALAVAIEEKDNHIRMLMAQQGNHEVQISEYRQIVKELSDKLELYETKYGTVFRT |
| Ga0307488_1000114528 | F000379 | AGGAG | MYNRINYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKEDAITVVDSPLLVPVFKKDDYCYVDGYGDVIESNLSWNKEDMRKDVGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVTIESIREVLETEKV |
| Ga0307488_100011455 | F002093 | AGGAGG | MAYDNTLPAGGPANFITPDRATESEGVAVDFITVDYISDVSAEIKNPRAAAALGGLHLAQEAIQNQGVNILGTGNLGNSDTEQTYMVRRDALDDISSTTTVAAIQAAIRALNAMTPDKVTATISSATAADRDMGDTSVGA |
| Ga0307488_100011458 | F073442 | AGG | MQRNFILTDVMKTGIHTDLEQFIDMHSLPDQTFDMTGEYYTLHNYDLDSYDRKFAIIDCRAQNNRLKDNTEFYSELRKRCDLLHSQGFVFIKASPWESLDNVNNSRQYYYPEIDLEHIKWTGGTSWFWFYMYVKHKDTKFNFDHSNKKYDFLHLIKQHRDHRVKLYKKLLDKGILENSLHTNWPTRKLPAEYELPWAQDYPRYGMDQDIFEKPYNDTACSIVSETNDNDYEVFMTEKIWKSILAQHVFVVHGNHLYLQRLREMGFTTFNNYFEEAYDLDRDPDVRINTIVDVCDHLRDAPWQDIYLQTKALRQHNFDTFFNKEKLSTEINNTLNLFLEFADSSQVSS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |