NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10043915

Scaffold Ga0307488_10043915


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10043915 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3501
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F057680Metagenome / Metatranscriptome136Y
F076516Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1004391511F076516N/AMKTKEELEQSVVMLEEALQSGLTQSKVAQADLTIAKQQLADINKPELTGSQLDDIQEAVEKAIGEFDFDDADNYDKEFELDYDGRVQLSTLDFTNSQELIEAVVEKVTKLFVEIEDEDND
Ga0307488_1004391512F057680N/AMTRLIDKVKPEVLRALDRHCKPHYPTSHRMIITSLQDIYHYRDLTIEQVNNLITFLPSEFKPKGDLDMFYGDNILLGKYIIK
Ga0307488_100439154F007611N/AMKKKWITVLDYSSGRVFQYQVSINKHAEEYIIFKKHRLKDVEWMEHNDSRLITN
Ga0307488_100439155F001802GGAMNMKTIKHLKNDYVQLDNLIYRPYKVCDLPQNFGCIEFKEKEGISEWFNYKGFTYLFEKMAKS
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