NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10046160

Scaffold Ga0307488_10046160


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10046160 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3399
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005796Metagenome / Metatranscriptome390Y
F025150Metagenome / Metatranscriptome203Y
F079883Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1004616012F079883GGAMGSAGFLYYQFAVVPMQNKLEEQTAVILAQDLRDQEQKATIVAIQENMEKT
Ga0307488_100461604F025150GGAGMIKVTTEGRKFPEFDTFIDECIVALFPEGVTYDINIRFQKFADKTGTHAGFCEGDDIESAIIVGTHWKYEDNETVAYEPHEIASNIAHELTHAKQFCKNQINMIDHVWKHASGTIDCVQLEYAETPWEVEAYAYEEILTDLLWENV
Ga0307488_100461606F005796GGAGMLVVELAVLMFCMIGCGMTCHALGKQEGIETTIEHLVDEGMLELEDEK
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