NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10066607

Scaffold Ga0307488_10066607


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10066607 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2724
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005105Metagenome / Metatranscriptome412Y
F007826Metagenome344Y
F015027Metagenome / Metatranscriptome258Y
F030601Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1006660710F007826AGGAGGMNKKTTFTFKLLNLIKKCREKGKFQLASKLIDKYKINREKLAEDYYD
Ga0307488_1006660711F030601GGAMYMPGIKDGATGKKELDTTVIELIKRILRLKTIHRDRGTYSATGDSLDLSDDGQPSDDSRRPLGESTVRGGVSQDDKPKQPIFVNEDPEYCKHLAKFFKGEK
Ga0307488_100666077F005105N/AMARKICDRCMGNGYRRIWKDQTESEKITIQCTKCESAGEIDEEPNYDNNGFGTDKLQ
Ga0307488_100666079F015027AGGAGMQDKLYEATKKEVMSEHEEYVNADVPKQVWVDRNKYLHEHVNKLTDEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI
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