NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10102567

Scaffold Ga0307488_10102567


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10102567 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2083
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079223Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_101025673F079223AGGAGMARLRSLNLRLKFHTSYNTHPIVIKYKDSVVNEIDLHIDQTEQKKEITFEGFSPDDAKQKVSCTLEYNDREVDIQTISSLQMQDNQYVANTVIKNCKDIHFNGRLDLNFSKHWFRHNILSGASLDEDYVHWDQMSFANQEVFCVGDSFTFGHGVARNETWPSLLNRNAFNFGSEGLSHDGCVKNVKHILQNSKHVKQIICLLPGATRKLFNFEFLGSYGSIPISYTGEYTLPEEFTDEINDIKELIFKGSIDDEWIKACTDMIDLCNKHKVECWLSTWNNDMYMHIPTEYRLPIFPDMDTFKERASDDSHPHRKHYELFVKNIKPFVDKRQS
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