NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10139597

Scaffold Ga0307488_10139597


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10139597 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1711
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F069051Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_101395972F069051N/AMADDIDIFWTPEGHARDRRWDRDQNAGLLNIVFQGGTFGNFLRYFLERFSTKTPDIAGNPFTDTGTSHTLENKDFSGLIQRSHQSFINDNEGNTDLPVCLITPSTGKHFLYLKKAQWFRAGDRKISPDDLWKKAVGEMPEVLAVKAKEIIKLYDIKDTAHFTWLPKFIVRDWYKLEFLQDLEDTYHYRWFDTFKTHKFLEGQKVFHLDLETFFNWDTLLGNITELDEVFDLALDFNRQVEMKEIFDMGLSLDTIRQECNLAEDVLTNRSDLMLDQLDVATEAFIYAEMEKSNPDIQMPLTNRFLRDSEEIRQFIEHYPNWYRRPNPNIN
Ga0307488_101395973F000302AGGAGGMIGTMTQDTKDRIRELEGQKVILEDRLEHLGYASNLVKMHEVEEQIFELEDTIRKLLG
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