NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10169487

Scaffold Ga0307488_10169487


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10169487 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1509
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004629Metagenome430Y
F011253Metagenome293Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_101694872F004629AGGAGGMIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPYRKSFRELKKFFLPSSHEKVRSDYYKALLDLSMVYNTKGYKYISK
Ga0307488_101694873F011253AGGMNNRKAEIDKIIKDMVKNKSIPYANAVTKIKKDRKGYYQQKDIKLKNKSLSTDRFQQYLKAIQEEDNDSN
Ga0307488_101694874F001839N/AEKLIYIICKSFENAPRGCRISHKYLMIRTGIKTVPTLVAALDRLTLFGMLARKQIENGTCHYVFDKPTMQEYILHNLNKRKKISLSKNKQQRDHSKARSYPNVINIKGVINXLYNFGTIENFTWDYRKPHSI
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