Scaffold Ga0307488_10174214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307488_10174214

Scaffold Ga0307488_10174214

Overview

Basic Information
Taxon OID	3300031519 Open in IMG/M
Scaffold ID	Ga0307488_10174214 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1483
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F096191	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_101742142	F096191	AGGA	MALRKIIIDGYNHAVNSVTTVTFDGVEVFLGAVSAEVVDENDVWSTDETNPVAIVEFEYNNADDTQETEHSLRIEVTAGQIRAGNIWVEATRDAVIANSYPENKFPAVDIDGVYYYSPGDQGVYGDQSKSALPERTNILINDAEPISVGYEGNHSGYEFLLSAGDTFACTVRVPAELSTH

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