NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10321383

Scaffold Ga0307488_10321383


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10321383 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)988
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F024207Metagenome / Metatranscriptome207Y
F066838Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_103213831F024207N/ARRNKSKVRQLVNFMGIEGTADFLSQQGGRDISANDVVALLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEAVSMGTTRRAPVRRTVNRSTSIKI
Ga0307488_103213832F001611AGGAMPLVQKTLTLAAGATSDNILANTNYEFIDGNVRCRVASAVDTAGTTATADTFLNVSVNNAEFSKDVSVPALVTGSPFGVLNGTYVNNDLITTGSMRNRVLVRFTNDTAGTRTIRCGVFIG
Ga0307488_103213833F066838GGGGGMGQEFFINSQTLEDQVRKLLPSQGGAGAGFDLSASTQIIPIIDLTESAEGSGLRQDLQTAVSNSVVNVTSSASTVDLVINTGFWRIFGGTIRDTASGSATVSL
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