NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10693660

Scaffold Ga0307488_10693660


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10693660 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008882Metagenome / Metatranscriptome326N
F013295Metagenome272N
F019728Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_106936601F013295AGGAGMKINDLTPKQFARREIIKYLRDLFDNPAKYITNFESYTHKQQEEILRFVSLDEDRINKLL
Ga0307488_106936602F019728N/AMSKEIITKKELEKNDWTVIPKGVWFGVDFAESHKVNVLNILTDLLNLDTDAEGYNFVVCAYKKQENEDEN
Ga0307488_106936603F008882N/AKPKINRQELELLNWFLAHTNDNPLINSEALELFKAHGFSAMNYQDLLNKIKTILKTYKTKGERR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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