NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000003

Scaffold Ga0272428_1000003


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000003 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)441137
Total Scaffold Genes292 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)143 (48.97%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_1000003127F007459N/AMYFNCSTINFFLHAIICEYLISLLIITSIELYLSSIIEFINLNNLIIKFIITLFYNDLNN
Ga0272428_1000003132F007459N/AMYFNCFVINFFLHAIICKYLISLLIIINIKLYLSLIAKFVNLNNLIIKFIVTLSYNNLDN
Ga0272428_1000003134F007459N/AMYFNCFAINFFLHAIIYKYLISLLIITSIESYLSLIIKFVNLSNLIIKFIVILFYNDLDN
Ga0272428_1000003135F010658N/AMIKALVEREEYSIRKKSNAYNLIIVDENSLLARNEKVNKETKLLSIAI
Ga0272428_1000003138F007459N/AMYSSCFATNFSLHAIICKYLISLSTIISIELYLSLIVRFVNLSNLIIKFIVTLFYSNLDN
Ga0272428_100000372F020636N/AMIIFRRNFKNSLKNKIMRDDKFISDIFNFIEVVIDFDDKLYKKIMKKQYN
Ga0272428_100000377F007459N/AVNFFLHAIIYKYLINLLIIINIKLYLSSIARFVNLSNLIIKFIVTLFYNDLDNF
Ga0272428_100000381F007459N/AMYSSCFAMNFFLHAIICKYLISLSIIISIELYLSSIVKFVNLSNLIIKFIVTLSYNDSSN
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Institute for Fundamental Biomedical Research
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