NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000018

Scaffold Ga0272428_1000018


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000018 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)279428
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (57.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_1000018153F007459N/AMYSNCFTMNFFLHAIIYKYLISLSIIINVKLYLFLIAKFVDLSNLIIKFIITLSYNDSNY
Ga0272428_1000018155F015284N/ALFNYNILKINKNESLLTNKYELNTILRIFQNNKKEFLIKKEKFQIFINKIDECIKKHYDKSLQKHLKVIKIL
Ga0272428_1000018156F007459N/AMYFNCFAINFFLHAIIYKYLISLSIIINIESYLSLIARFVDLSNLIIKFIVTLSHNNLDN
Ga0272428_10000183F007459N/AMYLNCFAMNFSLHAIICEYLISLLIITSIESYLSLVAKFINLSNLVIKFIVTLSHGDLDN
Ga0272428_10000185F010658N/AMIDFDATSNFMIRALIKRKEYFIRRKSNAYNLVIVDRNSLFDKNEKVNKEMKSLLITI
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