NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000096

Scaffold Ga0272428_1000096


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000096 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)168008
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100009649F007459N/AMYSSCFTMNFSLHAIIYKYLISLSIIINIKLYLFSTIKFVDLSNLIIKFIVTLFYNDLNN
Ga0272428_100009651F020636N/AMTMFRQNLKNNFKNEIIHNNKFISDIFDLIKVVIDFDDKLYKKVMKKRYN
Ga0272428_100009652F010658N/AMINSNAIDNFITRALVKRKEYFIQKKLNAYNLVIVNENSLRARNERINKETKSLLVAI
Ga0272428_100009655F007459N/AMYLNCSIVNFSLHAIICEYLVSLLIIISIKLYLFLIARFVDLSNLIIKFIVTLSYNNLNN
Ga0272428_100009691F007459N/AMYFSCFIVNFFLHAIICEYLISLLIIINIELYLSSIVKFVDLNNLIIKFIVTLFYNDLNN
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