NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000166

Scaffold Ga0272428_1000166


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000166 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140790
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (53.85%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100016627F020636N/AMTMFRQDFKNNLKNEIMCDDKFINDMFNFIEVVIDLDDKLYKRAMKKKYDQF
Ga0272428_100016628F010658N/AMINFDAIDNFITRVFVKREKYFIRKKFNAYNLVIVDKNSLFDENKRVNKETKLLSIAI
Ga0272428_100016629F007459N/AMYFSCFAMNFFLHTIICEYLISLLIIISIKLYLSLVAKFVNLDNLIIKFIVTSSYNDSNN
Ga0272428_100016631F007459N/AMYFNCFIVNFFLHAIICEYLINLSIIINIELYLFSIAKFVNLDNLIIKFIVTSFYNESSNFKY
Ga0272428_100016693F007459N/AMYFNCSIMSFFLHAIIYKYLINLSIIINIELHLFSIAKFVDLNNLIIKFIVTLFYNNLNN
Ga0272428_100016695F007459N/AMYFNCFIVSFFLHAIIYKYLINLSIIINIELYLFSIAKFVDLNNLIIKFIVTLFYNNLNN
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