NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000174

Scaffold Ga0272428_1000174


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000174 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139789
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (48.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100017426F007459N/AMYFNCFAINFFLHAIIYKYLISLSIITNIKFYLFLIFKFVNLSNLIIKFIITLFYNDLNN
Ga0272428_100017428F007459N/AMCFNCFVVNFFLHAIIYKYLIRLSIIISIELYLFSIAKFVNLSNLIIKFIVTLSYNDLSN
Ga0272428_100017460F020636N/AMTMFRQDFKNNLKNEIMRDNKFINDMFDLIEVIIDFNNKLYKRAIKKNTINLKKE
Ga0272428_100017461F007459N/AMYFSCSTMNFFLHAIIYKYLISLLIIINIKLYLSLVAKFVDLDNLIIKFIVTLFYNDLNN
Ga0272428_100017462F007459N/AMYSNCFAMNFSLHAIICEYLISLSIIISIKLYLSSIVKFVDLDNLIIKFIVTLFHNDLDN
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