NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000199

Scaffold Ga0272428_1000199


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000199 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)132702
Total Scaffold Genes129 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (50.39%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100019962F007459N/AMYFNWSIINFFLHAIIYKYLISLLIIISIKSYLFSIARFVNLSNLIIKFIVTLFYNDLSN
Ga0272428_100019964F015552N/AMTQLTLNAKISNIIKVSLFFANYNKELNLFKKERKHLLAQLVIERIATLKKIYDNILIMQKRSIKY
Ga0272428_100019965F007459N/AMYFSCFAMNFFLHAIIYKYLISLLIIINIELYLSLVARFVDLSNLIIKFIVTSSHNDLSN
Ga0272428_100019966F010658N/AMINSSAIDNFMIKALVKRKEYFIRKKSNAYNLIIVDENLLFNKNERVNKERKLLSIAI
Ga0272428_100019968F007459N/AMYFSCSTMNFSLHAIICEYLISLLIITSIELYLSSIARFVDLDNLTIKFIVTLSYNNLDN
Ga0272428_100019969F020636N/AMTMFRQNLKNNLKNEIMCDDKFINDMFDLIEVIIDFDDKLYEKAMKKKYN
Ga0272428_100019979F007459N/AMYFNCSIVNFFLHAIIYKYLINLLIIISIESYLSLIVKFVNLSNLIIKFIVTSFYNDLNN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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