NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000298

Scaffold Ga0272428_1000298


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000298 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114249
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (63.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015284Metagenome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100029826F007459N/AMYLNCFAINFLLHTIICKYLISLSIIINIELYLSLIAKFVDLSNLIIKFIVTLSYNDLDN
Ga0272428_100029827F010658N/AMINFDIIDNFITKAFVKREKYFIQKKFDAYNLVIIDKNLLFARNKKVNKETKLLSIAI
Ga0272428_100029832F007459N/AMYFNCFAMNFFLHAIIYKYLISLLIIINIKLYLFSIARFVNLNNLIINFIVTLYYNNLDN
Ga0272428_100029833F015284N/AMKKSFNYNIFKINKNELLLINKYELNAILRIFKNNKKKFLIKKKKLQIFINKINKCIKKHYNELLQKHSKVIKIL
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