NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1000664

Scaffold Ga0272428_1000664


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1000664 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79832
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (32.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100066421F007459N/AMNFFLHAIIYKYLISLLIIINIELYLSSITRFVDLSNLIIMFIVTLFYNNLNNF
Ga0272428_100066422F010658N/AMINSNAINNFTTRALVKRKEYFIRKKLNAYNLVIVDKNSLLAKNEKVNKETKLLSIAI
Ga0272428_100066435F007459N/AMYLSCFAINFSLHAIIYKYLISLFIITSIESYLSLVVEFVDLSDLIIKLIVTLSYNDLSN
Ga0272428_100066436F010658N/AMVDFDTIDNFMIKALVERKEYSIRKKPNAYNLIIVDENPLFDKNEKVNKETTLLLIAI
Ga0272428_100066455F020636N/AMFRRDLKNNLKDEIMRNDKFINDMFNLIEVVIDFDDKLYKRAMKKKYDQF
Ga0272428_100066456F010658N/AMINFDAINNFMTKTLVERKEYFTRKKLNAYNLVIVDKNSLFDENEKVNKETKSLSIAI
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