NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1001026

Scaffold Ga0272428_1001026


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1001026 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62625
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (28.89%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F015284Metagenome255Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100102621F015552N/AMTQLALNAKISNITKITSFFVNYNKEFNLFEKERKHLLTQLVIERIATLKKIHNNISNMQKKSIKY
Ga0272428_100102622F007459N/AMYFNCSIVNFFLHAIICEYLISLLIIINIKSYLFLIIKFVNLSNLIIKFMITLSYNDLNN
Ga0272428_100102623F020636N/AMFRRNLKNNLKNEIMCDDKFINDMFDFIEVVIDFNNKLYKRVIKKQYN
Ga0272428_100102628F020636GAGMIMFXRNFKNNLKNEIMRDNKFINDMFDLIEVFINFDNKLYKRAIKKRYN
Ga0272428_100102630F015284N/ALFNYNILKINKNESLLANKHKLNVILRILKDNKKEFLIKKEKLQIFIDKIDECIKKYYDKSLQKHLKVIKTL
Ga0272428_100102631F007459N/AMYFNCFAINFFLHAITYKYLISLLIIINIKLYLSSIAKFVDLNNLIIKFIITLFHNDSSN
Ga0272428_100102632F015552GAGMTQLTLNAKISNITKITLFFVNYNKEFNLFKKEQKHLLTQLIIERIAILKKIYDNISKMQEKLIKY
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