NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1001408

Scaffold Ga0272428_1001408


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1001408 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51523
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (63.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015552Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_10014082F010658N/AMIDFNAIDNFITKALVKRKKYFIQKKLNAYNLIIVDKNLLFDKNKKVNKETKLLSITI
Ga0272428_10014084F007459N/AMYSNCFAMNFFLHAIIYKYLISLLTIINIKLYLFLVARFVNLSNLIIKFIVTLSYNDLNN
Ga0272428_10014085F015552N/AMTQLTFNAKISNTIKITSFFVNYNKEINLFKKERKHLLAQLIIERITTLKKIYDNILKMQEKLIKY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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