NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1001481

Scaffold Ga0272428_1001481


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1001481 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49981
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (51.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F015552Metagenome253Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_10014812F007459N/AMYLSCFVINFSLLAIICEYLINLLIIISIELYLSLVARFVDLNNLIIKFIVTLFHNDLDN
Ga0272428_10014813F015552N/AMAQLALNAKISNITKITLFFVNYNKEFNLFEEERRHLLAQSIIKKIATLKRIHDNILKMQERSIKY
Ga0272428_10014815F010658N/AMINFDAIYNFITRALVKKKEYFIRKKLNAYNLMIVDKNSLLARNKKVNKETKLLSIAI
Ga0272428_10014816F020636N/AMNNLKNEIMCDDKFINNMFDLIEVIIDFDDKLYKRVMKKRYN
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