NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1001785

Scaffold Ga0272428_1001785


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1001785 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44482
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (86.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F016760Metagenome244Y
F029944Metagenome186Y
F102178Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100178513F029944GGAGVGTLAYTVDGQGLVLSVREATPPPSDSPPARADTVPPVALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDTCRAATRPPTTQRRRSAR
Ga0272428_10017852F009446GGCGGVSDLSADLARADEAWVAAADVELTPTAIRAVVRALGGGEGRAQVAAGNKELAGQLGISVRTVQRWQKEGGQGEARSVARSTPGLRISVRGIATEQQRQANARAFRERVQEQGLDVALCRVLVKVYNEDRPRPRNIGPQHIGGDALTDALDALEAGDGAGAADAFGAAWLEAYGMDAVDATITDVVGTFQIGA
Ga0272428_100178520F016760GGGGGMSVTSGIKRVARATGRGLVVLAVPRTVRRSTDDLRSVEMSPALGLVLRLAAVLVIAGTVLAVHAVGHPLLGLAREGLLLVGAVIILALSGALAPQGRLLGRLLLSYARREAGRRGLTWRGRFFRVLARRLELATSEKAKDKGKTDDRKR
Ga0272428_100178526F102178GGAGMAHADRPAPLVPAPLSARVRARALVGVAVSVTYPYLLGGLVGYLALTALSRDIGLMFAGALLVLYGTALGKAVQGGAP
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