NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1004473

Scaffold Ga0272428_1004473


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1004473 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23670
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100447311F058564AGGAGMMDPIGYLMHGHPLRSRCFDDDYRLDNHGAAYAHDGQSVAAAVAPIHTGDPDDGVPCAGCGQPLAAPADAGAAGIVWTCPYCGSNDLRVLYDERRACRVTTLNDTGDPADAEPWPSYAGDEFVDIDPGSFAFHCDACNTHDITPRKGGGISDLGHRQAA
Ga0272428_100447312F034417AGGAGGVTWAIVKPRDAWLRQTKEPWAALEPQAPQGAQVRALAAIDHENVAWLIEALCALTPGQVRTELQDLAGLRPVSEVLGILDLGNATSNDTATWDW
Ga0272428_100447313F074201AGGAGGMDTVDITPTPEACRQIARLFRQQKDLAARAAQALTDLDGCDAADLAPWGRAFLTAAFEALYEDEGARIRHMDEALDALGPYVHAGDSEEDHEDAH
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