NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311364_10745154

Scaffold Ga0311364_10745154


Overview

Basic Information
Taxon OID3300031521 Open in IMG/M
Scaffold IDGa0311364_10745154 Open in IMG/M
Source Dataset NameIII_Fen_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)984
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0311364_107451541F049375N/ASSTRSIYETYQGSIRWDGIVLYSGQIFIKTASDKTFEGTLYINKGNFNYEVKDLILNRIDFGMKSFASEDIAMNYFNWSLSRYYPDVDFAMPQITNTLYYDPPTTNPELQAYNMIFPVDSKLHKTTTDGQRRTILVPFLYLRCVLNKLAENFGYTLQDEFFTSASELSRLVIYHSVNISDLFFGLTQMYYCQYLPKVKVGDFIKGLEKWFNCSFHVDTNRRIVRIVGNKEVLLHSEVIEFSKNVLSITQEILDPVSGYEFLLGPDSGDKVYQAQLDQEKGITDFIKGSVQSFTDIPPYPFTWIGDIYYIVDTDSWWQLGVNGISFLIE
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