NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_10686800

Scaffold Ga0302320_10686800


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_10686800 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1167
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F010139Metagenome / Metatranscriptome308Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0302320_106868001F070324AGGAGGMANISELLNGWGFGKQTAIGTANLVATIWRHTNLNTKPWAKVPVNED
Ga0302320_106868002F010139AGGAGMDSVFMRSPEGEVKEVEATTEKLTILMASGWHQVPAPVVAQKSVVVAEEEEQHG
Ga0302320_106868004F002261GGAMPNWPSIEAFVDGVMLQTFGEPVVYQPVQAGVAQGNPFTVTAIRHLRVREESGAVANFEEISVNPTDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
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