NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_10097033

Scaffold Ga0302326_10097033


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_10097033 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5300
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100369Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0302326_100970331F100369GGAGGMPADETIRKRDQERLRQWALTLGSSVQSREVRVALQYLQALDVCDLLIQSAERKAEFASAALFRFGLDTLTTGFWIACIATEEWLRAEGNVHIPSNLERTIAALPLPARTMLEEVVNSGFIDDSKRMLLKDVLNPATHGDALVSVMRIGSATAQGKNWAQYLSRLMNELTHNFVVLIRELGGID
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