Basic Information | |
---|---|
Taxon OID | 3300031525 Open in IMG/M |
Scaffold ID | Ga0302326_10546145 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1741 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001528 | Metagenome / Metatranscriptome | 677 | Y |
F005822 | Metagenome / Metatranscriptome | 389 | Y |
F011771 | Metagenome / Metatranscriptome | 287 | Y |
F014867 | Metagenome | 259 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0302326_105461451 | F011771 | GGAGG | VIDEKPTQKGENTMASGLARFGGLDQLDWLMIVLSVLLGTIAKQHHLLDLPDGFLEWILPFLLMAAGYKARGVLVELIESRRAKAKSNSGE |
Ga0302326_105461452 | F014867 | GAGG | MRSLFPSSYDRADVLMSAGCSTFVSASLILVVPHFGILLLEILLGLFFIGCALVARRRLRRRALGKDGPEKSKDRKVRWFDKYDVLMIGAVIVVQTCTAGMLRKAGLSEGTVNTLPLILFAGGILLKPRAMEFLDGRKKTQQAARIYSDPPIQSVGAVDNSEVLRQTVLSSAAKDGDLE |
Ga0302326_105461453 | F005822 | GGAG | MKGSEPTMPVNEAETLVDAKTIQPPAGDGRNPRAIADSKAPPSKGTATRRRRDRQDNSKTGGEERFFLASGSSRGDVPALGRECASEAEAIIDAFRERVNFFRVAEFQTRADVGPAGEPILRKDGLKKNNPAS |
Ga0302326_105461454 | F001528 | AGGAG | MSERNQIVVVLIVALLLGAFIDRATALKIVAGVALLWTLQNQPTVFECIWKLSSLRRGGPSVREYRGGTTKVNGS |
⦗Top⦘ |