NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_10546145

Scaffold Ga0302326_10546145


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_10546145 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0302326_105461451F011771GGAGGVIDEKPTQKGENTMASGLARFGGLDQLDWLMIVLSVLLGTIAKQHHLLDLPDGFLEWILPFLLMAAGYKARGVLVELIESRRAKAKSNSGE
Ga0302326_105461452F014867GAGGMRSLFPSSYDRADVLMSAGCSTFVSASLILVVPHFGILLLEILLGLFFIGCALVARRRLRRRALGKDGPEKSKDRKVRWFDKYDVLMIGAVIVVQTCTAGMLRKAGLSEGTVNTLPLILFAGGILLKPRAMEFLDGRKKTQQAARIYSDPPIQSVGAVDNSEVLRQTVLSSAAKDGDLE
Ga0302326_105461453F005822GGAGMKGSEPTMPVNEAETLVDAKTIQPPAGDGRNPRAIADSKAPPSKGTATRRRRDRQDNSKTGGEERFFLASGSSRGDVPALGRECASEAEAIIDAFRERVNFFRVAEFQTRADVGPAGEPILRKDGLKKNNPAS
Ga0302326_105461454F001528AGGAGMSERNQIVVVLIVALLLGAFIDRATALKIVAGVALLWTLQNQPTVFECIWKLSSLRRGGPSVREYRGGTTKVNGS

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