NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10001789

Scaffold Ga0307380_10001789


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10001789 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30978
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (80.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054845Metagenome139Y
F072119Metagenome121Y
F090330Metagenome108Y
F090344Metagenome108N
F101123Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_1000178913F072119AGGAGMAYKLNAKRDVDTDEPGVFILNLPGGWRFNHDPMSVCHTYAYDSMKELRQDIKHSVEPCDCDECKRMIANHQ
Ga0307380_1000178914F054845N/AMTTTGLRPQEDFMEDYDAAGQAHQEDLLRQYKAEEDAGLFSPVYVLQGERLTAEIQYFKSMEAI
Ga0307380_1000178917F090330AGGAMSNHGANVVRITALCADLRDLTAASLLETKELEEVITRCIEIQKEAFHLQEWAMSALDMEYAKALDARKHRLQRLTDLEQ
Ga0307380_100017897F090344AGGAGGMTPENEVEQVITRSMSAAEIMDLTGHNKWTLFPILHRLIRENKITKKNLRYAPTGYSDKLISNKQDQFFCADPFGLSGLRDNRDLQSRLRAMQTKNFATGTMQGLTAADGRKVRWA
Ga0307380_100017899F101123AGGMNLAAIDAIWNKMLVTYGSEWSRKFGDQPLDEVKGAWADDLRGFTVEQIKYGLSMLGERPPNLIQFKDLCKKAPQYFDSLQLTYRPTPSEEKLAKFRRAYAD
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