NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10019218

Scaffold Ga0307380_10019218


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10019218 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8233
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F014228Metagenome264N
F015723Metagenome / Metatranscriptome252Y
F039112Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_1001921811F009600N/AMRLSDSRQLTYKVVVGKVPSLNAFYASKHWTVRKNAKDKHCDEVLAQLYTMDCVPIHQVHITCLVNYRYDVDNSIMAVKFALDAFKKWGAIRDDSPKYVQQIILIHSEAIAKDTAEIIFEGVILE
Ga0307380_1001921812F039112N/AMTLSFSQDVYTEMVQVQQAQIQALQNKIAELQARIDVMEQQSILFI
Ga0307380_1001921813F015723N/AMSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGSSYTPSAPKTDERSASIIRQVALKSAVEYACAAKHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPF
Ga0307380_100192189F014228N/AMNGSTPLKLNPNRLVIWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLQLYRDTTIYQDKVLLQMQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLGLILVGAYIVKRWVDKLTE
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