Scaffold Ga0307380_10033335

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307380_10033335

Scaffold Ga0307380_10033335

Overview

Basic Information
Taxon OID	3300031539 Open in IMG/M
Scaffold ID	Ga0307380_10033335 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5907
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F010535	Metagenome / Metatranscriptome	302	Y
F048950	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_100333353	F048950	AGG	MDIKDLITAIERLQAVYDSMVDQEQHEAKQYVRWAIKHLADKCYMAAL
Ga0307380_100333358	F010535	AGG	MTEPQIVNYSVYRGTMDNGQEILVQIFTDSESGDYLMGQIAFRTLSSSWGIPYPLEKK
Ga0307380_100333359	F001872	N/A	VGYIKAKAGVPNARDYIGNADGPSPKPRAGMDEWIKQAIAHSDGALWNNGSYMIRDMKGRVGSLSVHATGRAVDLSFRKRPENPNANRKNAMAFLRVVMANANELGVQAVLDYWPEPHGRGWNCSRQKWLKYTKPTIKGSPRGDWIHIEISPQAADSVIWVKAAFLKVFGEIPQKD

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