NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10043804

Scaffold Ga0307380_10043804


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10043804 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5008
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075043Metagenome / Metatranscriptome119Y
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100438045F075043AGGAGGMRRIVYAMMKIRQDQLADAKVPQNRIEECGAMFAELDKSLSGIASANTFKEVMTSADFTYALEEFVQRQMMPGYTRMQFAFEPLVKMDVVPNFQQVDRYQQRAGLEDLEYVGEKAQARPGSVVDATPRRYSVYRWEKQFDFSYEALVNDDLQYFQNLATLMGEAARRTLERFVSRMYTNAVTIARLTVLGALYWTTGRLTTNRVSTARMAFGQRVDDRNSPMEADLKYIVYHRGLQDTVSQILNSTQVAELATNAVNVVSFTPIKDPHMAGTAPNLPWFAFTDYNASGVIPFVLARLQGRPGPLILRKKSDTESATSLLGGGGAVDPILGDFASGNIVLKVSDVWGTYIDGTEGNMFDSRGCYGSSGTAP
Ga0307380_100438046F092306AGGAGGMTEPTTFKSSTDWQQSSEPLVIVDVQEGDCWPVDVRSESTTKDQLDEGLHPIIAIGEYAAPGRPLNVTGVVASMNMSVLGTATDRVQVNIAHGAIVRQWVSNILTYAGQAPSTYEQTPVVGQPVYVDDSADLSAGVTVSMSPLNWNDVENPLAGVLWYCQDEIADGQVGGARAISTFDTALPNAATEQEYCVMLVAGFRELV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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