NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10108898

Scaffold Ga0307380_10108898


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10108898 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2838
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F009883Metagenome / Metatranscriptome311Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101088981F000903AGGAGGMIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWTVAKALGYDYTPGITWDKSKADVGDHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNTSQNNWSVPQINLQPIETLMRSNYAHPYV
Ga0307380_101088982F000403GGTGGVSDYIEIIHPQSMTAKLLYQGEVISEYKIEQCDKCSQLKKFDKFGYQKGYDKADNIIWFCGDCR
Ga0307380_101088984F012452AGGCGGMSFMDNYEGNKDRTDRWIATFPQGRLEAHIVEFNAEKGYVLIQAKAWRNQDETQPAGVDYAFGYREAYPEKMRRWMIEDTTTSALMRVMALVMGGTEKSTKETMEKVNAADVYDPWTSKFGDVPSYKTAEEAEMSGTPSFGSSMDEIANELFGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCDPLWYVFTSRGKWEPQV
Ga0307380_101088985F009883GGAGMNEASIVIMMVIAGALWAVMSYSVGFREGQRQGYTRGRAVARHAVSAERKAVK

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