NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10331063

Scaffold Ga0307380_10331063


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10331063 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F019449Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_103310632F001923N/AMSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVFAAAITAALVGYGIQDHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVAGKPSKPYGKGKAKKPTAKRGK
Ga0307380_103310633F019449N/AMSVETFTTIVVPGIASVAYFSAGVACFFAGRPALAVMWLCYSVANICLLSTVIRK

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