NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10002516

Scaffold Ga0318516_10002516


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10002516 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7625
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005101Metagenome / Metatranscriptome412Y
F007168Metagenome / Metatranscriptome356Y
F024189Metagenome / Metatranscriptome207Y
F078094Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100025163F078094GGAGMDSEHRDLVTKTRALIETTRREILQLREEIESARTTVDRAQRLLSRTEPSAEPVPKLAKA
Ga0318516_100025167F024189GGAGGMPITPYLDGMSFSPETKRVMGVAFEMVCAALRLSDRGDPANEFIARRIIELANAGEHNPDLLCENVLNEFRAQAS
Ga0318516_100025168F007168AGGCGGMREKIGYCRERAAECAARAQEAADKDTRELFLRFRNSWLNAAKRYESSTSVTPDESPQRRPSSFAPELSTRDWHERPNDARTDTTAERLGGA
Ga0318516_100025169F005101GAGMKDELTTILEAVRGAQAELADYLVSADRNAELTIAKLVGILERREVVRAMRSLRVLEGPGAPQLALAEAS
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