NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10008937

Scaffold Ga0318516_10008937


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10008937 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4767
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002423Metagenome / Metatranscriptome560Y
F008335Metagenome / Metatranscriptome335Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100089372F002423AGGAGGMAPKPKPARFEFTVGMVLAMALTILAVMTWADRDLAAPSSSATYHPQLLLLY
Ga0318516_100089377F008335AGGGGGMIIDLDSWEAGYGDGLRGRPSQCTPGLDRFSYSSGYVQARASRAGTQEATRLRYVRSSIQRAPQRHGGSSRLIII
Ga0318516_100089379F002423AGGAGGMAPKPKPVRSVFTVGMVLAMALTILAAMTWAVAEPGLSLIYRPDLPLLY

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