NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10020750

Scaffold Ga0318516_10020750


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10020750 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3351
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001673Metagenome / Metatranscriptome654Y
F016220Metagenome / Metatranscriptome249Y
F022254Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100207501F001673N/AGVADLACDLGKPVTMRWPWVAMASFVVVLLVLALGHRWSMTASWFTSDNTCRERHATPWFAARLGMDCDRLLRARLWKLYDEGQFGRLRGGRGAVEYMKHLEHPDE
Ga0318516_100207504F022254GGTGGMAKPPQDRRTQPARQRTCIRLRARVDHLEDAISHFYNVINELRGRVSTLEKKLKLAKDDWIH
Ga0318516_100207505F016220AGGAMTKDEMLGWFKSAPMGSRHERMLWAARKIARLTGATEGGSYQMLLIALIEAEREPPDEYLDVLGRMQ
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