NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10049052

Scaffold Ga0318516_10049052


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10049052 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013239Metagenome / Metatranscriptome273Y
F023965Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100490524F023965GGAGGMNAQSIPVSRFSGHHTACAAAIVMALFGIAPLGTIADQRAATTPPSSVAEVSLSDLNLSTPDGMRLARDRLHAMAERLCADRGGGREPSSRPAFGLCVDSTVANALRHIDALRQTHVTVLTSVTLGAGVPLADLDLSTLEGAGIARQRLDAMARRLCGELARRHDVSYQPNYAACVHDTLAGALAQADAIAAARNTRTARRTAP
Ga0318516_100490525F013239N/AMRCCMRIRLATTSIAVAALHGTAQAGPVEACAQVSVLVDAAVRPLLAHPAESEPDATQLRAQFRACLSSRNICSVVYSAGDGKEALVAGDVTSDLPIQYVSAQGKSSVIFLVRSIPRVRNDTNQYCLVSEKFGGATSVRQWGVYGWVIAPNASEALPLEKQVLDYKPVSDPRSLRALAAALWFFAERMSGQPPR
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