NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10054651

Scaffold Ga0318516_10054651


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10054651 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2181
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001440Metagenome / Metatranscriptome694Y
F001673Metagenome / Metatranscriptome654Y
F033728Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100546511F033728GAGGMGADNQAESVPERKRLSAIAKIKQDLAWRSVTGVLREHIVLTRQQAEELIAEFERFSSQGGERVI
Ga0318516_100546512F001440AGGMAKAKSIGWAIYVAGFVIWLFGYLSTGHAATFDWDVVAPSWISSFVPNLEAEFGLALMFASMIPIYWRAGRKRP
Ga0318516_100546513F001673GAGMRRPWVAMASFVAVLLVLALGHRWSVTASWFASDKTCRERHATPWLVERLAIDCDRLLRERLWKLYDEGFGHLRGGRGAFDHMKQLEHPDE
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