NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10063804

Scaffold Ga0318516_10063804


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10063804 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2031
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008646Metagenome / Metatranscriptome330Y
F031728Metagenome / Metatranscriptome181N
F034278Metagenome175Y
F046918Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100638041F046918AGGAGMAMTTRQSTKTITMPSATMASATEESVPERVTQRKPEGGRFRLQVDRQTKGSYATYSYCVTNLG
Ga0318516_100638042F008646GAGMMNKSPKTRMELEALVLTELRAAPQCSGAVHVTVVAYDDYRVGATWEVASCNPGTSAPEHCERALCNIVRRLQQHFDITPT
Ga0318516_100638043F034278AGGAGVAEYLMTLAANYLELAERALRLYEPATAARRQHIKVMQKE
Ga0318516_100638045F031728GGAGMFNNGHEQLAKCPSQGLLRPGRFFWARAVSWGIVFGIVLWIAYKFVKGVGIDSGLDGSSGVPTVLGVLAAL
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