NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10170540

Scaffold Ga0318516_10170540


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10170540 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1252
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028383Metagenome191Y
F037519Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_101705401F037519N/AVRIQRLLIWAAWLAYVAAWFLPIVKEGATLPDGLPGWQAFRVATCAVWPCADISIDKWYKAVLFTISAVTTVLFIPVSLWAVSSGLRALRRAFAWVATSAFIVNAHWYVLYGGSARQDLRIGYFLWWLSFLLVALGLFDLPRRETSKQ
Ga0318516_101705402F028383N/AMKLELTKHLDKVRDTVTEVDRTVSSHKYPSDRRTVMVMGLLSTIIQHHRSMLHLIKSEGTAGSSWALARDILKGMRYGLWINSCATEEQILQIEEADEFPFGIPEVIKEIEAAYCTDRFFEGLKNRWGTQLYKYSRSDIFQLGRWEIGASSGLHLDDGEIREATTIATLCIVLLAGKFLAGQGHSADCELIETLAADYAARAS
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