NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318534_10016333

Scaffold Ga0318534_10016333


Overview

Basic Information
Taxon OID3300031544 Open in IMG/M
Scaffold IDGa0318534_10016333 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3853
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001673Metagenome / Metatranscriptome654Y
F004853Metagenome / Metatranscriptome421Y
F016220Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0318534_100163331F016220AGGAMTKDEMVEWFKSAPEGSRHQRMLWAAHKIARLTGVTEGGAYQVLLVALIEAESRPPDEYLDVLGLTR
Ga0318534_100163333F004853AGGCGGVRGRIANAKSFGWAIYAAGFAIWLFGYLSAGHAPLFDWNATTPWWISSFVPNLEAELGLALIFASVIPIYGRAVWGNLARLFAFAALLVFGAVTLAWWGFLAWLIRHVI
Ga0318534_100163334F001673AGGMRRPWVGMASLVVVLLVLALGHRWSVTASWFTSDKTCRERHATPGFAARLGMDCDRLLRARLWKLYDEGQFGRSRGGQDAVEYMKHLEHPDE
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