NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318534_10074533

Scaffold Ga0318534_10074533


Overview

Basic Information
Taxon OID3300031544 Open in IMG/M
Scaffold IDGa0318534_10074533 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1924
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022331Metagenome / Metatranscriptome214Y
F026464Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0318534_100745332F022331GAGGMQLSSIELRTLVAAQIASGLVGQVAPEAPQATIDQVVQLALRIAKTLQNAAIKSMHEKDAPP
Ga0318534_100745333F026464AGGAMDQHPNRQMPDDELVEIADRPQLWISRDGYAKTLRAGLVRAGHIADRGRSPYPLEGPTGVRVELTQMSRLWNRLGIVREKRPA

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