NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318541_10005069

Scaffold Ga0318541_10005069


Overview

Basic Information
Taxon OID3300031545 Open in IMG/M
Scaffold IDGa0318541_10005069 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5501
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000435Metagenome / Metatranscriptome1147Y
F009082Metagenome / Metatranscriptome323Y
F025238Metagenome / Metatranscriptome202Y
F090024Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0318541_1000506910F090024GAGVQTLAKVYEDRADEFSRAAQQTDDPVFCRLLLMLALQWKLAAQGEAKSKDASTSLASTQPQP
Ga0318541_1000506911F009082GAGGMRAWVVGIAVVVAIGLIWSFAVMSNFVPVDGSGMSLAGISRPAE
Ga0318541_100050694F025238AGGGGGMRVNIWIVLIVLIALFAVTRLLRYQQDRQRICADDPSASVCGR
Ga0318541_100050699F000435AGGAGMSDEYDGLDATEKGWHWDRVLNRCRCLATKIANELRHKRSEHFVDKLSLADVHASLERAADVPSTVKSSQAQGRREKATAR
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