NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318541_10069884

Scaffold Ga0318541_10069884


Overview

Basic Information
Taxon OID3300031545 Open in IMG/M
Scaffold IDGa0318541_10069884 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020668Metagenome / Metatranscriptome222Y
F023500Metagenome209Y
F042116Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0318541_100698844F023500GGAGMRALILASAVGLAFAASTQAAPLAPMPTRIELGVAPHIELVRDGCGRGWHRDRWRDHSGDWHWGHCIPNGGPHDAWTAGWSHPYLDWRTEPPR
Ga0318541_100698845F020668AGGLLANDPKRRPMKTATDRAVEAIEAAEKIFAEEMGATLDLTPVAKAALIATISAVIHAEETEQLT
Ga0318541_100698846F042116GGAGMSGVMFVLFKSALTSRLLFVNPSFVRIVVEGDQTGQVKICFDDQHSVTVQGAAAEVAQKL
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