NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318538_10017771

Scaffold Ga0318538_10017771


Overview

Basic Information
Taxon OID3300031546 Open in IMG/M
Scaffold IDGa0318538_10017771 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028118Metagenome / Metatranscriptome192Y
F029352Metagenome / Metatranscriptome188N
F062052Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0318538_100177711F028118N/ATLTARAGAPIRELKQFQELVKRNCAELAYCEGIAISTKHFTFSKLPVFSTKVTERFKINSIGKDGGATRHQFSPTGETVAYTAQAAELWITDGRSLTPAAEVLEHAFQWWCKFINEMSMS
Ga0318538_100177712F062052AGGAGMSIKIGDKVRHAVTHEEGAVVAISNDTPTCVEVRFSNSLPYLIATKELELVATPTRVRQRFS
Ga0318538_100177713F029352AGGAGMLDRRTVELVLISLAAAFCGGLAWALDHELFAVVFAAAAVTGAFGAVAALVGTGGSPPN
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