NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318538_10018142

Scaffold Ga0318538_10018142


Overview

Basic Information
Taxon OID3300031546 Open in IMG/M
Scaffold IDGa0318538_10018142 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3085
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F022921Metagenome / Metatranscriptome212Y
F102203Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0318538_100181422F102203N/AMPDDDHRFSGPCPHPEQIDLAAIKTDLEFAIDQISRLHRQLARTALGIIFSTAVITTLLGWCFLAR
Ga0318538_100181423F000315N/AMTLHNAANAKVRLIVWCKACGHQVEPDPAEMARQYGAATSVLDWRHRLVCSGCGGRQVDMVVTGTERR
Ga0318538_100181424F022921GGCGGMLKRYGANALDESAARADELALAGDDDGAATWRRIMAAMTELANNTPPGRVN
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