NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318538_10053345

Scaffold Ga0318538_10053345


Overview

Basic Information
Taxon OID3300031546 Open in IMG/M
Scaffold IDGa0318538_10053345 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1983
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001027Metagenome / Metatranscriptome802Y
F020449Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0318538_100533451F020449N/AAPDPSAARAYEKINKVYATVTTFTDPLFRSMAAGLQGLGRA
Ga0318538_100533453F001027N/AMAVTTGELVPPRHILVNGKRIRLRWLQQVIWLFLAANIGAWVISALYYLFVELRWHAGGHTFLYLKPDWDHLFSFRGWAADRHDVRDVYEALLATLFVRSLLANWRKHNRQAPAWYVALSPILIVVVAFPIVAAGIWLINYALPYLWHALLAHRALHNPVHLPGRLDWLGTYLSGYPWQPVLIGILAGLVVHRVYAPAGNTVQLYFIGRSVDRTRDAIAAGEPDPHRHLPHWPWPPVIRERAAWIMDNQLPVPDRTRDIRWAVRFFVVVLTALAIYGAYVRYVVAKGH
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