Basic Information | |
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Taxon OID | 3300031546 Open in IMG/M |
Scaffold ID | Ga0318538_10086941 Open in IMG/M |
Source Dataset Name | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1595 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016308 | Metagenome / Metatranscriptome | 248 | Y |
F065309 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0318538_100869411 | F065309 | GGAG | MRVTELQFDTAVRGAIAVFAKFGVDVKRLYLSGDEVKNLSPDAIQSLFLAKLKQARNGILIKYHQDRTGNKDASQEINPAYDILKQPGAIRMPVLTAGGVDWSQGWEKYENQPQPSAKTETPVWAMAGFSGGAPPSASIYRQNYTDDNFIKKAMWELSGQSKEEWTISGFDGNFFRNSITVYGSPKIFNNMADAMIQWQTKGGNAYPIRAVFVSRRRSSDLLLIWADGTYHGDNPIKMEHDSFNDNPGNDQQFQRELPAL |
Ga0318538_100869413 | F016308 | N/A | MVTTTRILLYARWLENFAPGFVATVILCETGEEYRDRDLLDQVARLIELFGVAGAAQIVGCPP |
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